Organic farms make up 6.5% of California dairies and are overrepresented in our sample ; however, this overrepresentation has the advantage of providing more accurate estimates for management practices from this sector of California’s dairy industry. The mean percentage of calves housed individually on dairies in our study of California dairieswas similar to the proportion of dairies that reported housing calves individually in the survey of California dairies by Love et al. , but larger than the mean nationally . Given the similar order of magnitude in breed distribution and other factors, such as organic status and individual calf housing, results of our study could be extrapolated to dairies in California and elsewhere that fall within the study herds’ description and climate.Case definitions for BRD vary widely between studies and, therefore, any comparisons of results should be interpreted with caution. Some studies rely on treatment records by dairy staff, whereas others use certain clinical signs for diagnosis, which may also differ between studies. Most epidemiological studies on BRD in dairy calves report incidence rates rather than prevalence. Lago et al. found a prevalence of 14.3% in 225 dairy calves housed in barns in the winter in Wisconsin and diagnosed with the Wisconsin BRD scoring system for preweaned calves. Buczinski et al. found a median prevalence of 8% in the summer and 15% in the winter for lung consolidation diagnosed by ultrasound, consistent with BRD in preweaned calves in 39 dairy herds in Québec. Indoor housing and poor ventilation are associated with BRD, so the higher prevalence in the Wisconsin and Québec studies in the winter is not unexpected . Both Buczinski et al. and Lago et al. reported a gradual increase in prevalence from birth to the sixth and seventh week of life, respectively; we observed a similar rise in prevalence,hydroponic tables canada which continued until 65 d of age . The fact that most of the calves in the current study were housed outdoors may explain the lower prevalence observed of 6.9%, comparable to what Buczinski et al. observed in the summer. Distributions of the percent of cases by age stratified by breed or region are shown in Supplemental Figures S2 and S3 , respectively.
Even though we observed lower prevalence in the NSJV region compared with the other regions of the state, region was not significantly associated with BRD when adjusting for other factors in the multivariable model. We observed lower prevalence in herds between 1,000 and 3,999 milking cows compared with herds with fewer than 250 or more than 4,000 milking cows. Likewise, we found no association between herd size and BRD in the final model. Little evidence exists in the literature to support associations of breed or herd size with BRD. A previous study found a higher risk of preweaning calf pneumonia in Ottawa for increasing number of calvings per farm per year . No interpretation for this result was offered by the authors and it may not be relevant to the large California dairy farms of today.In the current study, we observed positive associations of calves housed in hutches made from metal components and BRD. In a study based on the same data set, the prevalence of BRD observed in calves housed in wooden hutches was similar to the prevalence of calves housed in metal hutches . However, in NCA, BRD prevalence for calves housed in hutches or pens made of metal was significantly higher compared with those housed in wooden hutches . Furthermore, a longitudinal study of 11,300 preweaned calves in California showed that calves housed in hutches made of a combination of wood and metal were at higher risk of BRD compared with calves housed in hutches made of wood only . Calf-to-calf contact in the age group over 75 d was also significantly associated with BRD. Results of past studies on the effects of hutch type on calf health were mainly focused on the effect of plastic type hutches or available space. Calvo-Lorenzo et al. housed calves in wooden hutches of 3 sizes between April and July in California to assess the effect of hutch space on health, performance, and respiratory immunity. Calves were raised in conventional California-style wooden hutches and allowed either 1.23, 1.85, or 3.71 m2 /head of space. Those authors concluded that increased space may improve pulmonary immunity and health, although it was not apparent which component of the increased space allowance environment influenced the finding. We did not observe an association of hutch space with BRD in the present study, possibly because hutch material may be the more important component associated with BRD. The temperature in plastic hutches can average 5 to 10°C higher than in wooden hutches and ventilation is comparatively poor, leading to accumulation of heat, carbon dioxide, and humidity . Several studies have compared the effect of plastic hutch types on performance and health outcomes in dairy calves, and although agreement exists that plastic hutches increase heat stress, none have found significant associations with adverse health outcomes .
No references regarding the effect of metal style hutches were found in the literature, but heat stress and possibly cold stress are likely associated with metal hutches and may explain the current study findings. Specifically, 69% of metal hutches housing individual calves on 9 dairies in the current study also had metal roofs, whereas 31% on 13 dairies had no roof but were under a shed or other shade structure. The difference in health outcomes between hutch types should be researched further, ideally using an experimental study design comparing a limited number of hutch designs, including hutches made from metal components. The large number of different hutch designs in our study made it difficult to elucidate the association between hutch material and BRD and has resulted in large confidence intervals around estimates. The current study identified a positive association between calf-to-calf contact and BRD in calves older than 75 d. Callan and Garry recommend spacing hutches at least 1.2 m apart to prevent calf-to-calf contact and transmission of respiratory pathogens. A distance of 1.2 m between hutches was rarely, if at all, the case on the California dairies visited for our study, and the feasibility of this strategy and its cost in terms of land needed to raise the same number of calves may be a challenging constraint. In calves that are close to weaning age , housing- or nutrition-related factors may be less important; thus, calf-to-calf contact with animals shedding pathogens may become a more important factor for their BRD status. Lagoon flush water could be a source of noxious gases that may irritate respiratory mucous membranes, making calves susceptible for opportunistic infections with commensals. The role of lagoon water on a dairy as a source of infective agents has mainly been studied with respect to enteric pathogens, including Mycobacterium avium ssp. paratuberculosis, Salmonella spp. and Escherichia coli and its effect on antimicrobial resistance in some of the pathogens . Alhamlan et al. found members of the Flaviviridae in lagoon water samples, a family of viruses that contains bovine viral diarrhea virus . Although the viruses were not categorized to the species level in Alhamlan et al. , it is conceivable that lagoon water could be a potential source for exposure to respiratory pathogens if used as flush water, especially if aerosolized particles are created,microgreen rack for sale potentially resulting in inhalation of pathogens.
If flush water is close enough to hutch floors, calves could also be able to ingest or have direct exposure of oral or nasal mucosae to pathogens. In addition to BVDV, bovine coronavirus is shed via feces and could cause respiratory disease in calves. The significance of lagoon water as a source of pathogenicity with respect to BRD should be further evaluated. We also observed a negative association between the presence of an additional shade structure over the hutch area and BRD. Shade could reduce heat stress as well as protect from rain or frost, resulting in lower odds of BRD. The association between shade and BRD was not observed for shade structures with 1 to 4 sidewalls, which could be due to an offset of the benefits due to a lack of ventilation. Coleman et al. studied the effect of supplemental shade structures over polyethylene calf hutches in Alabama during the summer on feed consumption, growth, calf stress, and bedding contamination. Their study found no differences between groups in terms of health-related outcomes, but humidity and coliform counts in bedding were higher in shaded hutches, which may be due to the difference in climate between the 2 states, specifically the higher humidity in Alabama during the summer months.Feeding pasteurized milk versus nonpasteurized milk, including milk replacer, was associated with reduced BRD prevalence. Numerous studies have underlined the importance of pasteurizing milk fed to dairy calves for the prevention of enteric disease as well as exposure to potential respiratory pathogens . Mycoplasma spp. are mastitis pathogens that can be shed by clinically or subclinically infected cows and can colonize the nasopharynx of calves fed the milk resulting in otitis and respiratory disease . Mycoplasma and other bacterial pathogens ingested in the milk can also spread hematogenously to the lungs, where they cause respiratory disease . A study from Spain found decreased morbidity and mortality in calves with adequate transfer of passive immunity during the first 3 wk of life that were fed heat-treated colostrum and pasteurized milk versus those that received nonheat-treated colostrum and nonpasteurized milk . A separate study by Godden et al. found a higher risk of pneumonia in calves fed milk replacer than for calves fed pasteurized waste milk. Those authors argued that the improved immune function was attributable to higher energy and protein intake or the presence of medium-chain fatty acids in the whole milk, which have shown antimicrobial effects in pigs. We also observed a negative association of feeding a diet consisting of at least 90% saleable milk for at least 7 d at time of farm visit with BRD versus any other milk diet, including waste milk or milk replacer. Several studies have evaluated the effect of milk intake volume on calf performance . Medrano-Galarza et al. found no associations between within-pen prevalence of BRD and peak milk allowance in a study of majority Holstein group-housed dairy calves fed with automated milk feeders. However, calves in that study were fed at least 4 L per calf per day before and at least 6 L per calf per day after introduction to the group pen. A different study, similarly found no difference in incidence of BRD between Holstein calves fed a maximum of 6 or 8 L of milk replacer per day in a randomized trial comparing performance and health response of dairy calves offered different milk replacer allowances . Higher amount and quality of milk replacer fed was found to be associated with superior immune function in Jersey calves . The group of Holstein calves fed ≤2.84 L of milk or replacer per day in our study was fed less than the lowest amounts supplied to calves in the above-mentioned studies and were likely not able to consume enough starter to meet their nutrient requirements for growth and development if they were under 2 mo old . Results in our study showed increased odds of BRD for Holstein calves fed ≤2.84 L and decreased odds of BRD in Jersey calves fed >5.68 L of milk or replacer, which may reflect the effects of nutrition on immune function but should be interpreted with caution due to the relatively small samples in those categories, resulting in large confidence intervals for estimates. Restricting the analysis to calves ≤75 d of age did not change the sign or statistical significance of contrasts except for the comparison of >5.68 to ≤2.84 L of milk or replacer in Jersey calves, which became nonsignificant . Future research should quantify the benefits of saleable milk compared with waste milk or milk replacer further, as well as how the association with BRD is modified by pasteurization and amount of milk fed in the major dairy breeds.The current study found no significant associations between calf or dam vaccination status for respiratory pathogens and BRD in the study population.